Package index • mpactr

Import Data

import_data(): Import data into an mpactr object.

example_path(): Get file paths for examples

Access Data

get_peak_table(): Return the peak table data.table from the mpactr object.

get_meta_data(): Return the meta_data data.table from the mpactr object.

get_raw_data(): Return the input peak table from mpactr object.

get_group_averages(): Get groups averages.

get_cv_data(): Get CV values.

Filter Data

filter_mispicked_ions(): Mispicked ions filter

filter_group(): Filter Ions by Group

filter_cv(): Filter Non-reproducible ions

filter_insource_ions(): Filter Insource ions

Summarize Filtering

get_similar_ions(): Get similar ion groups.

filter_summary(): Return the summary for a single mpactr filter.

qc_summary(): Summary of Filtering

plot_qc_tree(): Visualize Filtering Summary as Tree Map

Data

cultures_data: LC-MS/MS sample data

Utility

limit_cores(): Limit Cores